Sugar-Coated Sheets Selectively Target Pathogens

July 18, 2018

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Sugar-Coated Sheets Selectively Target Pathogens
A molecular model of a peptoid nanosheet shows loop structures of sugars (orange) that bind to the Shiga toxin (shown as a five-color bound structure at upper right).

The Science

Can you catch viruses with designer flypaper? Researchers at the Molecular Foundry have developed a process for creating ultrathin, self-assembling sheets of synthetic materials that selectively bind with viruses, bacteria, and other pathogens.

The Impact

This is the first time that nanostructures have been engineered with such sophistication that they approach the structural precision and complexity found in nature. The new method will enable materials that can selectively detect proteins, and potentially viruses and cells. The materials could find use in biosensors, therapeutics, or the bioremediation of threat agents.

Summary

In nature, multivalency, or the ability to bind to multiple sites at once, is important for selective binding and plays a significant role in a variety of key biological processes such as guest-host recognition, cellular adhesion, and signal processing. Many infectious pathogens, such as virus and bacteria, specifically recognize host cells through multivalent interactions with sugars on the cell membrane to start the infection process.

A team led by Molecular Foundry researchers has developed a method to create peptoid nanosheets that can selectively bind multivalent proteins, building on their past development of peptoid "molecular Velcro." The researchers took advantage of the affinity of many proteins for carbohydrates and customized the surface of peptoid nanosheets with a variety of simple sugars.

The research team combined atomic-level precision with a modular synthesis method to precisely engineer peptoid nanostructures. The result is a hydrophilic, stable, free-floating sheet that can be readily functionalized to resemble the surface of a cell. This is the first time that nanostructures have been created with such sophistication that they approach the structural precision and complexity found in nature.

While there are other methods to synthesize multivalent compounds containing sugars, the products are generally heterogeneous and difficult to optimize because there is no structure-function relationship. Similarly, there are many 2-D nanomaterials, but they aren't stable, free-floating, biocompatible, customizable, and easy to make.

By using peptoids, rather than standard polymers, the researchers precisely controlled the monomer sequence and introduced specific modifications that dictate the final structure of the produced nanosheets, resulting in a customizable framework for recognizing sugar-binding proteins. The sugars were attached to the peptoid nanosheet using compounds of different lengths or within chemical "loops."

Contact

Ron Zuckermann
Molecular Foundry, Berkeley Lab
rnzuckermann@lbl.gov  

Funding

This project was funded by the Defense Threat Reduction Agency and the Defense Advanced Research Projects Agency Fold F(x) program. The work was conducted at the Molecular Foundry with support from the Advanced Light Source at Lawrence Berkeley National Laboratory, both of which are scientific user facilities supported by the Office of Science, Office of Basic Energy Sciences, Department of Energy. J.H.K. acknowledges the National Research Foundation for supporting the postdoctoral fellowship granted by the Korean government.

Publications

A. Battigelli, J.H. Kim, D.C. Dehigaspitiya, C. Proulx, E.J. Robertson, D.J. Murray, B. Rad, K. Kirshenbaum, and R.N. Zuckermann, "Glycosylated peptoid nanosheets as a multivalent scaffold for protein recognitionExternal link." ACS Nano 12 (3), 2455 (2018). [DOI: 10.1021/acsnano.7b08018]

Related Links

Berkeley Lab news release: Scientists Develop Sugar-Coated Nanosheets to Selectively Target PathogensExternal link

Berkeley Lab news release: "Molecular Velcro" May Lead to Cost-Effective Alternatives to Natural AntibodiesExternal link

Highlight Categories

Program: BES, SUF

Performer/Facility: University, DOE Laboratory, SC User Facilities, BES User Facilities, ALS, Foundry

Additional: Collaborations, Non-DOE Interagency Collaboration, International Collaboration